From aa5045c8bb5feca1d74e12e621eafbc84bf5b522 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Sun, 17 Nov 2024 15:48:05 +0100 Subject: Test coverage using github workflow With the current travis configuration, installation of covr failed, presumably because of the use of the Xenial distribution which is rather outdated meanwhile. The error occurred when installation of curl was attempted on travis: Error: C++17 standard requested but CXX17 is not defined --- .github/workflows/test-coverage.yaml | 61 ++++++++++++++++++++++++++++++++++++ 1 file changed, 61 insertions(+) create mode 100644 .github/workflows/test-coverage.yaml (limited to '.github/workflows') diff --git a/.github/workflows/test-coverage.yaml b/.github/workflows/test-coverage.yaml new file mode 100644 index 0000000..e050312 --- /dev/null +++ b/.github/workflows/test-coverage.yaml @@ -0,0 +1,61 @@ +# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples +# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help +on: + push: + branches: [main, master] + pull_request: + +name: test-coverage.yaml + +permissions: read-all + +jobs: + test-coverage: + runs-on: ubuntu-latest + env: + GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} + + steps: + - uses: actions/checkout@v4 + + - uses: r-lib/actions/setup-r@v2 + with: + use-public-rspm: true + + - uses: r-lib/actions/setup-r-dependencies@v2 + with: + extra-packages: any::covr, any::xml2 + needs: coverage + + - name: Test coverage + run: | + cov <- covr::package_coverage( + quiet = FALSE, + clean = FALSE, + install_path = file.path(normalizePath(Sys.getenv("RUNNER_TEMP"), winslash = "/"), "package") + ) + covr::to_cobertura(cov) + shell: Rscript {0} + + - uses: codecov/codecov-action@v4 + with: + # Fail if error if not on PR, or if on PR and token is given + fail_ci_if_error: ${{ github.event_name != 'pull_request' || secrets.CODECOV_TOKEN }} + file: ./cobertura.xml + plugin: noop + disable_search: true + token: ${{ secrets.CODECOV_TOKEN }} + + - name: Show testthat output + if: always() + run: | + ## -------------------------------------------------------------------- + find '${{ runner.temp }}/package' -name 'testthat.Rout*' -exec cat '{}' \; || true + shell: bash + + - name: Upload test results + if: failure() + uses: actions/upload-artifact@v4 + with: + name: coverage-test-failures + path: ${{ runner.temp }}/package -- cgit v1.2.3 From b10d246720105125395b6842adc8c985231ad515 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Sun, 17 Nov 2024 16:58:19 +0100 Subject: Give up on travis, check with github actions --- .github/workflows/R-CMD-check.yaml | 51 ++++++++++++++++++++++++++++++++++++++ .travis.yml | 5 ---- README.md | 1 + 3 files changed, 52 insertions(+), 5 deletions(-) create mode 100644 .github/workflows/R-CMD-check.yaml delete mode 100644 .travis.yml (limited to '.github/workflows') diff --git a/.github/workflows/R-CMD-check.yaml b/.github/workflows/R-CMD-check.yaml new file mode 100644 index 0000000..562fe0f --- /dev/null +++ b/.github/workflows/R-CMD-check.yaml @@ -0,0 +1,51 @@ +# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples +# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help +on: + push: + branches: [main, master] + pull_request: + +name: R-CMD-check.yaml + +permissions: read-all + +jobs: + R-CMD-check: + runs-on: ${{ matrix.config.os }} + + name: ${{ matrix.config.os }} (${{ matrix.config.r }}) + + strategy: + fail-fast: false + matrix: + config: + - {os: macos-latest, r: 'release'} + - {os: windows-latest, r: 'release'} + - {os: ubuntu-latest, r: 'devel', http-user-agent: 'release'} + - {os: ubuntu-latest, r: 'release'} + - {os: ubuntu-latest, r: 'oldrel-1'} + + env: + GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} + R_KEEP_PKG_SOURCE: yes + + steps: + - uses: actions/checkout@v4 + + - uses: r-lib/actions/setup-pandoc@v2 + + - uses: r-lib/actions/setup-r@v2 + with: + r-version: ${{ matrix.config.r }} + http-user-agent: ${{ matrix.config.http-user-agent }} + use-public-rspm: true + + - uses: r-lib/actions/setup-r-dependencies@v2 + with: + extra-packages: any::rcmdcheck + needs: check + + - uses: r-lib/actions/check-r-package@v2 + with: + upload-snapshots: true + build_args: 'c("--no-manual","--compact-vignettes=gs+qpdf")' diff --git a/.travis.yml b/.travis.yml deleted file mode 100644 index 862f118..0000000 --- a/.travis.yml +++ /dev/null @@ -1,5 +0,0 @@ -language: r -cache: packages -r: - - release - - devel diff --git a/README.md b/README.md index 758952d..cf11326 100644 --- a/README.md +++ b/README.md @@ -9,6 +9,7 @@ [![Build Status](https://app.travis-ci.com/jranke/chemCal.svg?token=Sq9VuYWyRz2FbBLxu6DK&branch=main)](https://app.travis-ci.com/jranke/chemCal) [![Codecov test coverage](https://codecov.io/gh/jranke/chemCal/graph/badge.svg)](https://app.codecov.io/gh/jranke/chemCal) +[![R-CMD-check](https://github.com/jranke/chemCal/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/jranke/chemCal/actions/workflows/R-CMD-check.yaml) ## Overview -- cgit v1.2.3 From afc256aa52f77e20e215e947d2aa061dccb682e5 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Sun, 17 Nov 2024 17:02:43 +0100 Subject: Reduce test matrix to save energy I do not expect relevant platform dependent behaviour in this package --- .github/workflows/R-CMD-check.yaml | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) (limited to '.github/workflows') diff --git a/.github/workflows/R-CMD-check.yaml b/.github/workflows/R-CMD-check.yaml index 562fe0f..1429649 100644 --- a/.github/workflows/R-CMD-check.yaml +++ b/.github/workflows/R-CMD-check.yaml @@ -20,10 +20,10 @@ jobs: matrix: config: - {os: macos-latest, r: 'release'} - - {os: windows-latest, r: 'release'} + #- {os: windows-latest, r: 'release'} - {os: ubuntu-latest, r: 'devel', http-user-agent: 'release'} - - {os: ubuntu-latest, r: 'release'} - - {os: ubuntu-latest, r: 'oldrel-1'} + #- {os: ubuntu-latest, r: 'release'} + # - {os: ubuntu-latest, r: 'oldrel-1'} env: GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} -- cgit v1.2.3