mkin/NAMESPACE, branch odeintr Fitting kinetic models to chemical degradation data (also on github) https://erac.jrwb.de/mkin/atom?h=odeintr 2015-06-19T15:46:11Z Use odeintr instead of ccSolve for compiling models 2015-06-19T15:46:11Z Johannes Ranke jranke@uni-bremen.de 2015-06-19T15:46:11Z urn:sha1:ec574cff822a1238138c0aa69b3d1459bdc3dfa8 Add a vignette showing the performance of compiled models 2015-04-17T22:06:38Z Johannes Ranke jranke@uni-bremen.de 2015-04-17T22:06:38Z urn:sha1:a26b44d15c11ebb41083fc2efab0cc91a027b55b Compile differential equation models with ccSolve package 2015-04-14T17:50:57Z Johannes Ranke jranke@uni-bremen.de 2015-04-14T17:50:57Z urn:sha1:b21c601052f85e392e48d903b8903a1a392fe786 If the ccSolve package is available, and time is not in the right hand side of the equations (i.e. if only SFO and SFORB models are used), the differential equation model is compiled from auto-generated C code. Currently, one test (FOCUS 2006 D SFO_SFO) fails Avoid NOTES in R CMD check 2015-02-21T05:56:35Z Johannes Ranke jranke@uni-bremen.de 2015-02-21T05:56:35Z urn:sha1:42739646dc36ff74d43b638fc2c4f5259496e2b9 - Export S3 methods - Avoid using undeclared variable names McCall 2,4,5-T dataset, lower bound for transform_rates=FALSE 2014-04-25T16:43:51Z Johannes Ranke jranke@uni-bremen.de 2014-04-25T16:43:51Z urn:sha1:59e2c3b5ce470ace53b93ad5e6e7d9acbfe86f21 - Fixed the NOTES listed by R CMD check 2013-09-25T09:18:52Z jranke jranke@edb9625f-4e0d-4859-8d74-9fd3b1da38cb 2013-09-25T09:18:52Z urn:sha1:5da266adcf184c7922fd595eda24599621f92565 Candidate for publication on CRAN git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@97 edb9625f-4e0d-4859-8d74-9fd3b1da38cb - Testing of the new fitting process with transformed parameters shows that it is 2012-04-11T15:49:50Z jranke jranke@edb9625f-4e0d-4859-8d74-9fd3b1da38cb 2012-04-11T15:49:50Z urn:sha1:5587e833e0898e687466129dbc14950ddd58f1e0 less stable than the way of fitting used in mkin 0.8. Presumably this is due to the frequent presence of products of two parameters (formation fractions and kinetic rate constants) in the differential equations. - mkinmod documentation was adapted to the new version - Introduce vim fold markers to the mkinmod source for convenience git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@24 edb9625f-4e0d-4859-8d74-9fd3b1da38cb - Fitting and summaries now work with the new parameter transformations. 2012-04-10T21:50:22Z jranke jranke@edb9625f-4e0d-4859-8d74-9fd3b1da38cb 2012-04-10T21:50:22Z urn:sha1:c1144753adfa0809003085009ebd85f8af9beda8 - The SFORB models with metabolites is broken (see TODO) - Moved the vignette to the location recommended since R 2.14 - Added the missing documentation - Commented out the schaefer_complex_case test, as this version of mkin is not able to fit a model without sink and therefore mkin estimated parameters are quite different git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@22 edb9625f-4e0d-4859-8d74-9fd3b1da38cb