mkin/NEWS.md, branch v0.9-37Fitting kinetic models to chemical degradation data (also on github)https://erac.jrwb.de/mkin/atom?h=v0.9-372015-06-23T09:17:27ZHopefully fix compiling on Solaris, verbose option2015-06-23T09:17:27ZJohannes Rankejranke@uni-bremen.de2015-06-23T09:17:27Zurn:sha1:548b67e5d54e78150cfc6474ad129af9408f4997
- Only declare the time variable in the C code when needed in the
derivatives.
- Add the option to show verbose output of cfunction() when compiling
the model to a shared library.
Version bump, correct benchmark in vignette/compiled_models2015-06-22T18:31:22ZJohannes Rankejranke@uni-bremen.de2015-06-22T04:09:00Zurn:sha1:01d9de6ff165c64ffc4366f2eeb3d2649b5c74c0
Reorganisation of the vignette generation in the Makefile.
Improved YAML header in the R markdown vignettes.
Rebuilt vignettes with the package installed.
Do the t-test for untransformed parameters2015-06-21T13:23:20ZJohannes Rankejranke@uni-bremen.de2015-06-20T23:46:51Zurn:sha1:6733555d7a9315c55001770bacc4c61c4d4f39d5Correction and improvement of NEWS2015-06-20T16:04:22ZJohannes Rankejranke@uni-bremen.de2015-06-20T16:04:22Zurn:sha1:fea21a504e7ce3df45c8c35d171b7e3856316126Low-level generation of compiled models2015-06-20T01:59:56ZJohannes Rankejranke@uni-bremen.de2015-06-19T23:06:24Zurn:sha1:062b9cc1d084e8bb5e552076fc48ade4b3050644
As it is unclear if and when ccSolve will be published on CRAN,
the generation, compilation and use of the C version of the
system of differential equations was developed for mkin, inspired and
guided by the code from the ccSolve package. Many thanks again to
Karline Soetaert for all of her work on this and other R packages.
Now all model types, including the Hockey-Stick model for the parent
compund and the IORE model for parent and/or metabolites can be compiled.
News entry for new vignette FOCUS_D2015-06-05T12:19:23ZJohannes Rankejranke@uni-bremen.de2015-06-05T12:19:23Zurn:sha1:50095da914eda659ceac137265d31b71ac3505b7Fix format of NEWS.md2015-05-18T15:04:32ZJohannes Rankejranke@uni-bremen.de2015-05-18T15:04:32Zurn:sha1:6177159706128a4d44ce10f5b37fd94bdf996c2dClean up meta information2015-05-15T12:10:28ZJohannes Rankejranke@uni-bremen.de2015-05-15T12:10:28Zurn:sha1:93cad3b4b3a5cd1a2be74cb5ab3e1ca1a90270b6Merge branch 'master' into compile_odes2015-05-15T11:55:19ZJohannes Rankejranke@uni-bremen.de2015-05-15T11:55:19Zurn:sha1:6c65cba39dbca98caf3f8e69552b3454ec1721fc
Conflicts
(resolved manually, deleting code that I had
integrated into the RUnit tests for testing the
compiled version):
.gitignore
DESCRIPTION
inst/unitTests/runit.mkinerrmin.R
inst/unitTests/runit.mkinfit.R
tests/testthat/test_mkinpredict_SFO_SFO.R
vignettes/FOCUS_L.html
Add synthetic data generated for UBA expertise, tests2015-05-15T11:04:36ZJohannes Rankejranke@uni-bremen.de2015-05-15T11:04:36Zurn:sha1:9a5d2378845e584a2a2c6c09f7ef99a82d09273b
The new tests are based on the results documented in the expertise
I wrote for the UBA (currently unpublished).