mkin/R/mkinmod.R, branch v0.9.43 Fitting kinetic models to chemical degradation data (also on github) https://erac.jrwb.de/mkin/atom?h=v0.9.43 2015-12-10T10:30:44Z Improve print method for mkinmod 2015-12-10T10:30:44Z Johannes Ranke jranke@uni-bremen.de 2015-12-10T10:24:16Z urn:sha1:c9667fbfd5a8c9601ac0c977776b12fe7d9b19dd Improve mkinmod error message for missing target compartment definition 2015-12-09T15:15:05Z Johannes Ranke jranke@uni-bremen.de 2015-12-09T15:15:05Z urn:sha1:652f58915d56aa225fc01bff007f19f3277eed9f Closes #6. Improve printing method for mkinmod 2015-10-24T10:55:07Z Johannes Ranke jranke@uni-bremen.de 2015-10-24T10:55:07Z urn:sha1:61b815b2418fec89fd3e613094bf28e596f18e7e Add a print method for mkinmod objects 2015-10-19T13:52:16Z Johannes Ranke jranke@uni-bremen.de 2015-10-19T13:52:16Z urn:sha1:8e709291eb56839b4b5a8f5bf712a53e3ece7d80 Hopefully fix compiling on Solaris, verbose option 2015-06-23T09:17:27Z Johannes Ranke jranke@uni-bremen.de 2015-06-23T09:17:27Z urn:sha1:548b67e5d54e78150cfc6474ad129af9408f4997 - Only declare the time variable in the C code when needed in the derivatives. - Add the option to show verbose output of cfunction() when compiling the model to a shared library. Suppress compiler warning for sometimes unused time variable 2015-06-20T15:52:51Z Johannes Ranke johannes.ranke@jrwb.de 2015-06-20T15:52:51Z urn:sha1:35ff2c2e7154b5d66a6b33e77d3f4f40282df3c2 Low-level generation of compiled models 2015-06-20T01:59:56Z Johannes Ranke jranke@uni-bremen.de 2015-06-19T23:06:24Z urn:sha1:062b9cc1d084e8bb5e552076fc48ade4b3050644 As it is unclear if and when ccSolve will be published on CRAN, the generation, compilation and use of the C version of the system of differential equations was developed for mkin, inspired and guided by the code from the ccSolve package. Many thanks again to Karline Soetaert for all of her work on this and other R packages. Now all model types, including the Hockey-Stick model for the parent compund and the IORE model for parent and/or metabolites can be compiled. Make mkinmod quiet in tests 2015-05-15T12:04:49Z Johannes Ranke jranke@uni-bremen.de 2015-05-15T12:04:49Z urn:sha1:ffc12f79fdb283bc59f073208c883b84271be121 Add a vignette showing the performance of compiled models 2015-04-17T22:06:38Z Johannes Ranke jranke@uni-bremen.de 2015-04-17T22:06:38Z urn:sha1:a26b44d15c11ebb41083fc2efab0cc91a027b55b Make compiled FOMC and DFOP models work 2015-04-17T14:54:42Z Johannes Ranke jranke@uni-bremen.de 2015-04-17T14:42:33Z urn:sha1:558b96b4e3cfd1845677620976f09bad2c641ecb - Many thanks @karlines for the hint in ccSolve#1 how to declare the time variable and for writing the ccSolve package in the first place - Add tests for the compiled versions of the FOMC and DFOP models