mkin/R/mkinmod.R, branch v1.0.3Fitting kinetic models to chemical degradation data (also on github)https://erac.jrwb.de/mkin/atom?h=v1.0.32020-12-03T14:13:59ZSmall doc improvement2020-12-03T14:13:59ZJohannes Rankejranke@uni-bremen.de2020-12-03T14:13:59Zurn:sha1:bde136db0a42fad5e128f40d8298bd9a35b96491Improved way to have persistent DLLs for mkinmod2020-11-27T20:19:19ZJohannes Rankejranke@uni-bremen.de2020-11-27T17:35:56Zurn:sha1:1e3fd1bef2a0ec1c8b73fcfefdd62fd3463bc87c
Depends on inline >= 0.16.2 (including the bug fixes from
eddelbuettel/inline#18), which provides 'moveDLL' to store the DLL for a
compiled function in a safe place in case the argument 'dll_dir' is
specified in the call to 'mkinmod'.
Huge thanks to Dirk @eddelbuettel for his review and support
for the work on the inline package.
Support storing mkinmod compiled code as CFunc objects2020-11-24T00:46:57ZJohannes Rankejranke@uni-bremen.de2020-11-20T18:43:46Zurn:sha1:503441b0a958c1df50df0ee7cfc3bde4ea1b1865
With automatic reloading in mkinfit and mkinpredict in case the
DLL is not loaded and the original DLL path has been cleaned up.
Depends on jranke/inline@974bdea04fcedfafaab231e6f359c88270b56cb9
See inline#13
Depend on parallel, doc improvements2020-11-19T14:41:24ZJohannes Rankejranke@uni-bremen.de2020-11-19T14:41:24Zurn:sha1:db9ae6a0c9cecb92048fde6f06af1da183c09b5f
By depending on parallel instead of importing it, functions to set up
and stop a cluster are always available when mkin is loaded.
The use of multicore processing in mmkin on Windows is now documented in
the help file, which brings mkin closer to a version 1.0 #9.
Improve mkinmod docs2020-05-27T06:54:54ZJohannes Rankejranke@uni-bremen.de2020-05-27T06:54:54Zurn:sha1:156b82b88dbd73e9370c74b474432b410415046dDocumentation improvements, rebuild static docs2020-05-12T06:36:31ZJohannes Rankejranke@uni-bremen.de2020-05-12T06:07:07Zurn:sha1:9ac853c7ceece333099021974025d07e75be2b33Avoid the call to merge for analytical solutions2020-05-09T19:18:42ZJohannes Rankejranke@uni-bremen.de2020-05-09T19:18:42Zurn:sha1:efab37957381919c21d874906ce870f4941c760a
This increases performance up to a factor of five!
Another overhaul of analytical solutions2020-05-07T20:14:19ZJohannes Rankejranke@uni-bremen.de2020-05-07T20:13:33Zurn:sha1:92bd33824bde6b6b21bfc7e30953092a74d3cce5
Still in preparation for analytical solutions of coupled models
Merge parent solutions to one file2020-05-07T07:13:20ZJohannes Rankejranke@uni-bremen.de2020-05-07T07:10:33Zurn:sha1:67c8163487e776e9a378c9dfcd39c74f6e6bc507
- Combine R/*.solution.R into R/parent_solutions.R
- Create a roxygen family of related functions
- Reduce redundancy by using the inherit tag
- Change the parent.0 argument to parent_0 to match
the corresponding parameter name used in mkinfit
Change implementation of analytical solutions2020-05-06T19:33:12ZJohannes Rankejranke@uni-bremen.de2020-05-06T19:33:12Zurn:sha1:1195dfc8bdbf7c131d6c6ec30fedbbe746af1bee
Preparing for symbolic solutions for more than one compound