mkin/R/plot.mkinfit.R, branch v1.0.5Fitting kinetic models to chemical degradation data (also on github)https://erac.jrwb.de/mkin/atom?h=v1.0.52021-03-31T17:42:17ZBug fix in plot.mkinfit2021-03-31T17:42:17ZJohannes Rankejranke@uni-bremen.de2021-03-31T17:42:17Zurn:sha1:3a5463672c297b37c3c9135c8b144c48744c05d0
In residual plots, use xlab and xlim if appropriate
Reset graphical parameters with on.exit()2021-02-24T13:58:04ZJohannes Rankejranke@uni-bremen.de2021-02-24T13:46:10Zurn:sha1:64fa10032f99490a5998589161574109484ee769
plot.mixed.mmkin did not reset graphical parameters at all. The other
plotting functions did not use on.exit, so this change should make the
use of the plotting functions safer.
Some more plotting improvements2021-01-25T16:55:06ZJohannes Rankejranke@uni-bremen.de2021-01-25T16:55:06Zurn:sha1:0280b9c8dcc77cb1d22964485462b27a56b96ecaChange default ylab in plot.mkinfit, explicit ylab for plot.mmkin2021-01-25T13:45:04ZJohannes Rankejranke@uni-bremen.de2021-01-25T13:45:04Zurn:sha1:737fc7f352bbb853b01ff6e3c6ec21a528da901e
See NEWS.md. Closes #12
mkindsg class to hold groups of datasets2020-11-12T10:11:03ZJohannes Rankejranke@uni-bremen.de2020-11-12T10:04:45Zurn:sha1:7b807680b66269ff911df137f56e26775d84e283
- D24_2014 dataset on aerobic soil degradation of 2,4-D from the EU
assessment as mkindsg object with metadata
- f_time_norm_focus() to do time-step normalisation using the FOCUS
method
- focus_soil_moisture data with default moisture contents at pF1,
pF 2 and pF 2.5 for USDA soil types from FOCUS GW guidance
- Dataset generation scripts in inst/dataset_generation
- Depend on R >= 2.15.1 in order to facilitate the use of
utils::globalVariables()
Avoid merge() and data.frame() in cost function2020-05-11T03:18:32ZJohannes Rankejranke@uni-bremen.de2020-05-11T03:15:19Zurn:sha1:234c9059a95e104917e488a6ddd2313234a96cdc
also for deSolve and eigenvalue based solutions. This noticeably increases
performance for these methods, see test.log and benchmark vignette.
Avoid the call to merge for analytical solutions2020-05-09T19:18:42ZJohannes Rankejranke@uni-bremen.de2020-05-09T19:18:42Zurn:sha1:efab37957381919c21d874906ce870f4941c760a
This increases performance up to a factor of five!
Fix standardized residual plots in 'plot_res'2019-11-04T23:05:34ZJohannes Rankejranke@uni-bremen.de2019-11-04T23:05:34Zurn:sha1:ead1f286271923f57d83aed41cb34181a10773efScaled residual plots2019-11-04T22:48:20ZJohannes Rankejranke@uni-bremen.de2019-11-04T22:48:20Zurn:sha1:3410513f55b3f8b5c4331f4fb4487613d3a28208Use roxygen for functions and methods2019-10-25T00:03:54ZJohannes Rankejranke@uni-bremen.de2019-10-24T22:37:42Zurn:sha1:0a3eb0893cb4bd1b12f07a79069d1c7f5e991495