mkin/R/transform_odeparms.R, branch v0.9.43 Fitting kinetic models to chemical degradation data (also on github) https://erac.jrwb.de/mkin/atom?h=v0.9.43 2015-06-20T01:59:56Z Low-level generation of compiled models 2015-06-20T01:59:56Z Johannes Ranke jranke@uni-bremen.de 2015-06-19T23:06:24Z urn:sha1:062b9cc1d084e8bb5e552076fc48ade4b3050644 As it is unclear if and when ccSolve will be published on CRAN, the generation, compilation and use of the C version of the system of differential equations was developed for mkin, inspired and guided by the code from the ccSolve package. Many thanks again to Karline Soetaert for all of her work on this and other R packages. Now all model types, including the Hockey-Stick model for the parent compund and the IORE model for parent and/or metabolites can be compiled. IORE working for parent and metabolites, introduce mkinsub 2014-11-12T15:59:48Z Johannes Ranke jranke@uni-bremen.de 2014-11-12T15:59:48Z urn:sha1:c04d0bb0e795b67b6958150e8524c5265587f618 Merge branch 'master' into iore 2014-11-12T12:44:17Z Johannes Ranke jranke@uni-bremen.de 2014-11-12T12:44:17Z urn:sha1:401570aa9e58c4a2f2e939f37f496453d97d3f33 Fix internal naming of g for transform_fractions=FALSE 2014-07-25T07:36:15Z Johannes Ranke jranke@uni-bremen.de 2014-07-25T07:36:15Z urn:sha1:e5c955f82adf6139d76f842a0b85e5d383685793 Bugfix, model shorthand, state.ini[[1]] from observed data 2014-07-21T07:20:58Z Johannes Ranke jranke@uni-bremen.de 2014-07-21T06:20:44Z urn:sha1:a1567638a3ba9f4d62fa199525097a94ddfd7912 - The bug occurred when using transform_rates=FALSE for FOMC, DFOP or HS - Make it possible to use mkinfit("SFO", ...) - Take initial mean value at time zero for the variable with the highest value in the observed data - Update of vignette/FOCUS_L - Improve the Makefile to build single vignettes First working fits with IORE model 2014-07-12T06:32:08Z Johannes Ranke jranke@uni-bremen.de 2014-07-12T06:32:08Z urn:sha1:316f1360d1e12eefe491f86b0bbcd6dcf091c736 Move handling of implicitly fixed formation fractions to mkinfit 2014-07-02T08:58:36Z Johannes Ranke jranke@uni-bremen.de 2014-07-02T08:58:36Z urn:sha1:aae5aad05cfe695ede46373e032e277e555a8af9 Support formation fractions without sink pathway, updates 2014-07-01T22:25:00Z Johannes Ranke jranke@uni-bremen.de 2014-07-01T21:23:52Z urn:sha1:71d43b104999d7aee96d35ff2a9006f739d2df60 Remove old ID tag, improve comment 2014-06-25T16:20:05Z Johannes Ranke jranke@uni-bremen.de 2014-06-25T16:20:05Z urn:sha1:606883b6dfa9ffdf11c280cfabe7580c67e73e58 Step back regarding confidence intervals of formation fractions 2014-05-20T07:50:33Z Johannes Ranke jranke@uni-bremen.de 2014-05-20T06:36:42Z urn:sha1:4110808d1953b8704ef48d0dc5b5e445cbde9af0 - Don't give confidence intervals for formation fractions that belong to a set, only for single formation fractions - Update the vignette with history and background - Correct 'isotropic' into 'isometric' in the ilr documentation, the README and the comments in transform_odeparms - Candidate for release to CRAN