mkin/R, branch mainFitting kinetic models to chemical degradation data (also on github)https://erac.jrwb.de/mkin/atom?h=main2026-09-07T11:45:39ZAdd DTx function, check and test2026-09-07T11:45:39ZRanke Johannesjohannes.ranke@agroscope.admin.ch2026-09-07T11:45:39Zurn:sha1:48d9cad339394c3aa0d730d9a27b1c0680ce13e8
The tolerance of one test had to be increased in test_deSolve.R,
and four vdiffr snapshots with negligible differences were updated.
Tests run with a maximum of 16 cores when running in the Agroscope
Apptainer environment.
Merge remote-tracking branch 'refs/remotes/origin/main'2026-06-22T13:53:43ZRanke Johannesjohannes.ranke@agroscope.admin.ch2026-06-22T13:53:43Zurn:sha1:46735d7a6d429bb0c50f951763797f321a0d77caAvoid uninformative warning2026-06-22T13:52:45ZRanke Johannesjohannes.ranke@agroscope.admin.ch2026-06-22T13:52:45Zurn:sha1:a18b7e5968e25c41a18ca3e6ba5d01a96e9eb408
This warning is currently triggered in the examples for IORE.solution.
Add two-component error model to 2,4-D example2025-11-28T08:49:35ZJohannes Rankejohannes.ranke@jrwb.de2025-11-28T08:47:18Zurn:sha1:1519d761ebb8c10350402b294907102d960b15a2
Also, explain the names of the metabolites.
Example evaluation of D24_2014, improve docs2025-11-28T08:20:07ZJohannes Rankejohannes.ranke@jrwb.de2025-11-28T08:20:07Zurn:sha1:fe411af3dbed474d9e5b3cc1d509f66bd76f7319Refactor for code readability2025-09-13T07:08:43ZJohannes Rankejohannes.ranke@jrwb.de2025-09-13T07:08:43Zurn:sha1:a5a73e8d76faff5983399386de571431e8824636Facilitate centering covariates2025-09-12T20:16:13ZJohannes Rankejohannes.ranke@jrwb.de2025-09-12T20:16:13Zurn:sha1:17af45b984d348505527140470c7fff204748ea6
The motivation for this is to obtain confidence intervals for
covariate dependent parameters that are valid for a median/mean
value of the covariate.
Implementation by adding an argument to the 'saem' function, and
adapting the relevant functions working with 'saem' objects.
Vignettes, the template and tests were updated to use the new functionality.
Fix solution type "deSolve" for a special case2025-02-16T16:29:28ZJohannes Rankejohannes.ranke@jrwb.de2025-02-16T16:27:18Zurn:sha1:4f62f39b8979cb3a5c52d65d425e530dc0770665
The special case occurs if not observed data for time zero
are available. Fixes #16. Write NEWS and update docs.
A lot of html was regenerated, because I had checked out
the main branch in between, which made pkgdown believe that
I have changed the help files.
Axis legend formatting, update vignettes2025-02-13T18:20:04ZJohannes Rankejohannes.ranke@jrwb.de2025-02-13T15:30:31Zurn:sha1:6476f5f49b373cd4cf05f2e73389df83e437d597Merge branch 'devel'2025-02-13T13:45:54ZJohannes Rankejohannes.ranke@jrwb.de2025-02-13T13:45:54Zurn:sha1:480c5cf42e07a7a62cf1afdb47c44ee2d04f120f