mkin/R, branch odeintr Fitting kinetic models to chemical degradation data (also on github) https://erac.jrwb.de/mkin/atom?h=odeintr 2015-06-19T15:46:11Z Use odeintr instead of ccSolve for compiling models 2015-06-19T15:46:11Z Johannes Ranke jranke@uni-bremen.de 2015-06-19T15:46:11Z urn:sha1:ec574cff822a1238138c0aa69b3d1459bdc3dfa8 Make mkinmod quiet in tests 2015-05-15T12:04:49Z Johannes Ranke jranke@uni-bremen.de 2015-05-15T12:04:49Z urn:sha1:ffc12f79fdb283bc59f073208c883b84271be121 Add a vignette showing the performance of compiled models 2015-04-17T22:06:38Z Johannes Ranke jranke@uni-bremen.de 2015-04-17T22:06:38Z urn:sha1:a26b44d15c11ebb41083fc2efab0cc91a027b55b Make compiled FOMC and DFOP models work 2015-04-17T14:54:42Z Johannes Ranke jranke@uni-bremen.de 2015-04-17T14:42:33Z urn:sha1:558b96b4e3cfd1845677620976f09bad2c641ecb - Many thanks @karlines for the hint in ccSolve#1 how to declare the time variable and for writing the ccSolve package in the first place - Add tests for the compiled versions of the FOMC and DFOP models Order of parameters needs to be right for compiled models 2015-04-16T11:21:36Z Johannes Ranke jranke@uni-bremen.de 2015-04-16T11:21:36Z urn:sha1:e610eb47f460bdb16a1160c9e4cc6fd7051d2546 Update copyright header, improve documentation of solution_type 2015-04-16T09:27:56Z Johannes Ranke jranke@uni-bremen.de 2015-04-16T09:06:39Z urn:sha1:c504e823809aa8a299ed5326a22505f82d891ce5 Check compiled mkinmod versions in examples and tests 2015-04-16T09:00:53Z Johannes Ranke jranke@uni-bremen.de 2015-04-16T09:00:53Z urn:sha1:ec9e65053b214fa30e8b947ccbc47930eeaa01a4 Tests all pass (Linux) Compile differential equation models with ccSolve package 2015-04-14T17:50:57Z Johannes Ranke jranke@uni-bremen.de 2015-04-14T17:50:57Z urn:sha1:b21c601052f85e392e48d903b8903a1a392fe786 If the ccSolve package is available, and time is not in the right hand side of the equations (i.e. if only SFO and SFORB models are used), the differential equation model is compiled from auto-generated C code. Currently, one test (FOCUS 2006 D SFO_SFO) fails Avoid NOTES in R CMD check 2015-02-21T05:56:35Z Johannes Ranke jranke@uni-bremen.de 2015-02-21T05:56:35Z urn:sha1:42739646dc36ff74d43b638fc2c4f5259496e2b9 - Export S3 methods - Avoid using undeclared variable names Add termination message to mkinfit, prepare release 2015-02-20T21:31:55Z Johannes Ranke jranke@uni-bremen.de 2015-02-20T21:31:55Z urn:sha1:df733ceeb044e41922930f89be437e2def92e804