mkin/R, branch v1.2.4 Fitting kinetic models to chemical degradation data (also on github) https://erac.jrwb.de/mkin/atom?h=v1.2.4 2023-05-19T15:10:16Z Prepare release of v1.2.4 2023-05-19T15:10:16Z Johannes Ranke jranke@uni-bremen.de 2023-05-19T15:08:43Z urn:sha1:cf54ccca37d27480dbf8d59eb027300518f7ad75 - Update DESCRIPTION - Update Makefile to document how to use R-patched - Remove markup from two URLs to avoid CRAN NOTE - Switch two vignettes from html_document to html_vignette to save space in the docs directory, also avoiding a CRAN NOTE - Complete rebuild of pkgdown docs for release Fix obtaining endpoints for user defined covariate values 2023-05-08T06:44:36Z Johannes Ranke jranke@uni-bremen.de 2023-05-08T06:44:36Z urn:sha1:c931057ce8f05d3a0dfefea72b73903efb82e900 Merge branch 'v1.2.3_pkgdown' 2023-04-20T18:17:12Z Johannes Ranke jranke@uni-bremen.de 2023-04-20T18:17:12Z urn:sha1:7b7c4bf493ba15824ea43bed764661678b4aca03 Post release changes to the docs 2023-04-17T19:58:17Z Johannes Ranke jranke@uni-bremen.de 2023-04-17T19:53:49Z urn:sha1:ee8c8a53903de1a0f480060900b706022af091b6 The cyantraniliprole and dmta pathway vignettes were not working any more with the latest changes in deSolve and mkin. All docs need a rebuild. Improve docs of multistart method 2023-04-17T17:39:09Z Johannes Ranke jranke@uni-bremen.de 2023-04-17T17:39:09Z urn:sha1:004fce2520d6889d82226e21bc443426e81d93f2 Suppress a warning about a path "(embedding)" 2023-04-16T15:47:10Z Johannes Ranke jranke@uni-bremen.de 2023-04-16T15:47:10Z urn:sha1:4140236154f35ccd99b22551947269348dc748db Increase test coverage 2023-04-15T18:00:00Z Johannes Ranke jranke@uni-bremen.de 2023-04-15T18:00:00Z urn:sha1:f215080efba4097ccdaa2d1208edd36c26d7978a Also, using mkin analytical solutions for more than one observed variable is not supported (but could be if out_values would be reordered). Make predefined symbols safer 2023-04-15T13:35:06Z Johannes Ranke jranke@uni-bremen.de 2023-04-15T13:35:06Z urn:sha1:b0b710ee9f9bb9bbe9708676d0c5822465e02203 We still need to create a parallel processing cluster _after_ creating a compiled model that is moved to a user defined location, at least I did not find another way to make it work. This is not a problem with parallel processing without a cluster, which is not available on Windows. Don't try(mkinpredict), it would still error later 2023-04-15T12:43:07Z Johannes Ranke jranke@uni-bremen.de 2023-04-15T12:43:07Z urn:sha1:50ea6d11f8c79218c98ee8ae56d8bdcd42cc703a Make using predefined symbols optional 2023-04-15T06:41:37Z Johannes Ranke jranke@uni-bremen.de 2023-04-15T06:41:37Z urn:sha1:f20a9d81cbcd514ed629b69364cd85a72ac06e95 I got crashes under some circumstances when using symbols stored in the mkinmod object. One such circumstance was the use of a moved DLL in combination with parallel computing on a cluster. As I cannot exactly define at the moment when this happens, it is better to make this an opt in.