mkin/R, branch v1.2.6 Fitting kinetic models to chemical degradation data (also on github) https://erac.jrwb.de/mkin/atom?h=v1.2.6 2023-08-07T09:06:17Z Typos 2023-08-07T09:06:17Z Ranke Johannes johannes.ranke@agroscope.admin.ch 2023-08-07T09:06:17Z urn:sha1:b1754e3d1112ea04e2ee4c393581362fb8f605f7 Mesotrione data and vignette 2023-08-04T11:27:41Z Johannes Ranke jranke@uni-bremen.de 2023-08-04T11:27:41Z urn:sha1:804a5cb47fcdc823d41c585729ace151b283ca65 The vignette illustrates pH dependent degradation (covariate modelling) with some detail for the parent compound. Also, a bug in the saem method of the illparms function was fixed, which prevented to find ill-defined parameters in cases where e.g. slopes of covariate models have a negative estimate. Prepare release of v1.2.4 2023-05-19T15:10:16Z Johannes Ranke jranke@uni-bremen.de 2023-05-19T15:08:43Z urn:sha1:cf54ccca37d27480dbf8d59eb027300518f7ad75 - Update DESCRIPTION - Update Makefile to document how to use R-patched - Remove markup from two URLs to avoid CRAN NOTE - Switch two vignettes from html_document to html_vignette to save space in the docs directory, also avoiding a CRAN NOTE - Complete rebuild of pkgdown docs for release Fix obtaining endpoints for user defined covariate values 2023-05-08T06:44:36Z Johannes Ranke jranke@uni-bremen.de 2023-05-08T06:44:36Z urn:sha1:c931057ce8f05d3a0dfefea72b73903efb82e900 Merge branch 'v1.2.3_pkgdown' 2023-04-20T18:17:12Z Johannes Ranke jranke@uni-bremen.de 2023-04-20T18:17:12Z urn:sha1:7b7c4bf493ba15824ea43bed764661678b4aca03 Post release changes to the docs 2023-04-17T19:58:17Z Johannes Ranke jranke@uni-bremen.de 2023-04-17T19:53:49Z urn:sha1:ee8c8a53903de1a0f480060900b706022af091b6 The cyantraniliprole and dmta pathway vignettes were not working any more with the latest changes in deSolve and mkin. All docs need a rebuild. Improve docs of multistart method 2023-04-17T17:39:09Z Johannes Ranke jranke@uni-bremen.de 2023-04-17T17:39:09Z urn:sha1:004fce2520d6889d82226e21bc443426e81d93f2 Suppress a warning about a path "(embedding)" 2023-04-16T15:47:10Z Johannes Ranke jranke@uni-bremen.de 2023-04-16T15:47:10Z urn:sha1:4140236154f35ccd99b22551947269348dc748db Increase test coverage 2023-04-15T18:00:00Z Johannes Ranke jranke@uni-bremen.de 2023-04-15T18:00:00Z urn:sha1:f215080efba4097ccdaa2d1208edd36c26d7978a Also, using mkin analytical solutions for more than one observed variable is not supported (but could be if out_values would be reordered). Make predefined symbols safer 2023-04-15T13:35:06Z Johannes Ranke jranke@uni-bremen.de 2023-04-15T13:35:06Z urn:sha1:b0b710ee9f9bb9bbe9708676d0c5822465e02203 We still need to create a parallel processing cluster _after_ creating a compiled model that is moved to a user defined location, at least I did not find another way to make it work. This is not a problem with parallel processing without a cluster, which is not available on Windows.