mkin/man/plot.mixed.mmkin.Rd, branch v1.2.0 Fitting kinetic models to chemical degradation data (also on github) https://erac.jrwb.de/mkin/atom?h=v1.2.0 2022-11-01T11:39:28Z Fix plotting saem fits with covariates 2022-11-01T11:39:28Z Johannes Ranke jranke@uni-bremen.de 2022-11-01T11:39:28Z urn:sha1:a787e5266628f859fd70454c5419721efa494887 Improvements to mean_degparms() and plot.mixed.mmkin() 2022-04-09T04:21:23Z Johannes Ranke jranke@uni-bremen.de 2022-04-09T04:21:23Z urn:sha1:c29e27b9bf5f5361db44e28b06da7b8a1e636e85 - New argument 'default_log_parms' for mean_degparms() - 'plot.mixed.mmkin': Pass the frame argument also to residual plots, take the 'default_log_parms' argument for 'mean_degparms' used for constructing approximate population curves, plot population curve last to avoid that it is covered by data Rudimentary support for setting up nlmixr models 2021-06-09T15:00:41Z Johannes Ranke jranke@uni-bremen.de 2021-06-09T14:53:31Z urn:sha1:c6eb6b2bb598002523c3d34d71b0e4a99671ccd6 - All degradation models are specified as ODE models. This appears to be fast enough - Error models are being translated to nlmixr as close to the mkin error model as possible. When using the 'saem' backend, it appears not to be possible to use the same error model for more than one observed variable - No support yet for models with parallel formation of metabolites, where the ilr transformation is used in mkin per default - There is a bug in nlmixr which appears to be triggered if the data are not balanced, see nlmixrdevelopment/nlmixr#530 - There is a print and a plot method, the summary method is not finished test_log_parms for plot.mixed.mmkin, roxygen run 2021-03-19T10:22:07Z Johannes Ranke jranke@uni-bremen.de 2021-03-19T10:22:07Z urn:sha1:6d6dc7d53bf99b088af3488588574afc832fb7fe Reintroduce interface to saemix 2021-02-06T17:30:32Z Johannes Ranke jranke@uni-bremen.de 2021-02-06T17:30:32Z urn:sha1:48c463680b51fa767b4cd7bd62865f192d0354ac Also after the upgrade from buster to bullseye of my local system, some test results for saemix have changed. Prepare for v1.0.0 2021-02-03T17:18:19Z Johannes Ranke jranke@uni-bremen.de 2021-02-03T15:41:31Z urn:sha1:f0ef23a7598e5d19648ae4edc2b74e0fba27a41c - Improve authorship and copyright information - Prepare pkgdown config - Remove dependence on saemix as we need the development version which is not ready for CRAN - Temporarily remove saemix interface to check code coverage of the rest plot.mixed: Possibility to overlay predictions 2020-12-21T05:02:10Z Johannes Ranke jranke@uni-bremen.de 2020-12-21T05:02:10Z urn:sha1:d28ce9f8ad6f9573e403ebd8eb637ecd5e5b0e02 mixed.mmkin and test coverage 2020-12-08T21:08:38Z Johannes Ranke jranke@uni-bremen.de 2020-12-08T21:08:38Z urn:sha1:f606838c5310f365eea1c0d6421f5c3636a4dc79 saemix.mmkin and nlme.mmkin inherit from mixed.mmkin 2020-11-09T16:24:53Z Johannes Ranke jranke@uni-bremen.de 2020-11-09T16:24:53Z urn:sha1:aa74f5a30853fb0a15c99c283e072f08ee819149 With a plot method. The class mixed.mmkin is currently only a virtual class created to unify the plotting method.