mkin/test.log, branch v1.0.3Fitting kinetic models to chemical degradation data (also on github)https://erac.jrwb.de/mkin/atom?h=v1.0.32021-02-15T14:20:53ZImprove README, introductory vignette and some other docs2021-02-15T14:20:53ZJohannes Rankejranke@uni-bremen.de2021-02-15T13:08:13Zurn:sha1:a9427a09abdf7ce9aaeae7c7190f90c8f2e5ef52
Also bump version to 1.0.3.
Update for gmkin 0.6.122021-02-13T05:54:46ZJohannes Rankejranke@uni-bremen.de2021-02-13T05:54:46Zurn:sha1:3532d769c1a3561de37e0d10cffa9801fe9df7c6
mkinfit: Keep model names stored in mkinmod objects, avoiding their loss in gmkin
Increase test tolerance for parameter comparisons2021-02-06T08:46:53ZJohannes Rankejranke@uni-bremen.de2021-02-06T08:46:53Zurn:sha1:2ee20b257e34210e2d1f044431f3bfe059c9c5e7
Platform dependence also revealed after upgrade to bullseye
Documentation improvements, mainly fixing example code2021-02-04T10:41:06ZJohannes Rankejranke@uni-bremen.de2021-02-04T10:24:22Zurn:sha1:ac183c732317cf6ede26a2ee127604a407f0a6b3
The errors in the example code were in the \dontrun sections, so they
were not caught by CRAN checks. In addition, the static help files
generated with pkgdown were cached, so I noticed the errors only
after completely regenerating the documentation for version 1.0.0.
Prepare for v1.0.02021-02-03T17:18:19ZJohannes Rankejranke@uni-bremen.de2021-02-03T15:41:31Zurn:sha1:f0ef23a7598e5d19648ae4edc2b74e0fba27a41c
- Improve authorship and copyright information
- Prepare pkgdown config
- Remove dependence on saemix as we need the development version which
is not ready for CRAN
- Temporarily remove saemix interface to check code coverage of the rest
Make saemix and corresponding tests optional2021-01-06T19:38:29ZJohannes Rankejranke@uni-bremen.de2021-01-06T19:34:52Zurn:sha1:f99bdd8697c3bfbd432a320774a4692fd0e1241a
Address release critical check and test issues
Dimethenamid data, normalisation options2020-12-19T11:23:08ZJohannes Rankejranke@uni-bremen.de2020-12-19T11:23:08Zurn:sha1:e25f0194736a090914c10a9f374946c0b89adc5bAdd a test for saemix with deSolve2020-12-10T08:24:35ZJohannes Rankejranke@uni-bremen.de2020-12-10T08:24:35Zurn:sha1:c58c14078f6a30c22863b7b9730f4afc39db4577
But skip the test as it takes too long to always run
Make saem using mkinpredict work again2020-12-09T20:35:02ZJohannes Rankejranke@uni-bremen.de2020-12-09T20:29:18Zurn:sha1:b8b60ef92c605e862294fd29c51e20e31e0ded81
I threw out mclapply as it did not play well with the linear algebra
routines used in the saemix code. Most of the change is actually
indentation in the code creating the model function. But there
is an important fix in mkinpredict which I had broken.
Some test fixes2020-12-09T18:12:38ZJohannes Rankejranke@uni-bremen.de2020-12-09T18:12:38Zurn:sha1:a5746dcc0e5a018548bf977f4ac61f0ad2a4dd2d