mkin/tests/testthat/_snaps/plot, branch v1.2.0Fitting kinetic models to chemical degradation data (also on github)https://erac.jrwb.de/mkin/atom?h=v1.2.02022-11-14T19:03:42ZAutomatic starting parameters for saem.mmkin2022-11-14T19:03:42ZJohannes Rankejranke@uni-bremen.de2022-11-14T19:03:42Zurn:sha1:21ad91256dc29423bd905de5c298fd23862b1f3b
For the case of mkin transformations. This gives faster convergence,
and appears to avoid problems with numeric ODE solutions
Change DFOP mixed model data in tests, updates2022-10-25T19:45:30ZJohannes Rankejranke@uni-bremen.de2022-10-25T19:45:30Zurn:sha1:a8ff8bed72dc537fe70cf2995ea769d3f519f877Summary method for mmkin objects2022-07-21T15:43:16ZJohannes Rankejranke@uni-bremen.de2022-07-21T15:15:12Zurn:sha1:b703ee38ffc8877be843cf5a557dd9c32c54f977
Also, add a method for gathering convergence information
and a method for gathering information on ill-defined parameters
Tests before release2022-07-12T12:44:55ZJohannes Rankejranke@uni-bremen.de2022-07-12T12:44:55Zurn:sha1:ab502a6aeacda7c70abe52b8c16e2a15f592a6edStore DLL info in mkinmod objects for performance2022-07-08T15:39:44ZJohannes Rankejranke@uni-bremen.de2022-07-08T15:39:44Zurn:sha1:f35e0b3d3b9f41bee2f5cc357afcb69e3aadad15
Thanks to Tomas Kalibera for his analysis of the problem on the
r-package-devel mailing list and for the suggestion on how to
fix it. See the current benchmark vignette for the new data
on mkin 1.1.1 with R 4.2.1, with unprecedented performance.
More control of y axes in plot.mkinfit, updates2022-04-13T09:11:02ZJohannes Rankejranke@uni-bremen.de2022-04-12T12:41:07Zurn:sha1:ea57db98cef3fb882f7bd9656b44f270e7bded38
Documentation and test results were updated, the latter with regard
to the previous work on plot.mixed.mmkin.
Remove nlmixr interface for release of mkin 1.1.02022-03-07T13:55:21ZJohannes Rankejranke@uni-bremen.de2022-03-07T11:03:40Zurn:sha1:7035cde3a53781721fe15a8893fdf328c789bdd2
I am postponing my attempts to get the nlmixr interface to CRAN, given
some problems with nlmixr using R-devel under Windows, see
https://github.com/nlmixrdevelopment/nlmixr/issues/596
and
https://github.com/r-hub/rhub/issues/512,
which is fixed by the removal of nlmixr from the testsuite.
For the tests to be more platform independent, the biphasic mixed
effects models test dataset was defined in a way that fitting
should be more robust (less ill-defined).
Make tests more platform independent, update docs2022-03-02T17:03:54ZJohannes Rankejranke@uni-bremen.de2022-03-02T17:03:54Zurn:sha1:2bb59c88d49b193f278916ad9cc4de83c0de9604Adapt saemix interface to saemix 3.0 on CRAN2022-02-09T11:19:14ZJohannes Rankejranke@uni-bremen.de2022-02-09T11:19:14Zurn:sha1:d8f31d1323998f33d07535f55c81be380d93ca45Update required saemix version, update tests2021-11-17T11:59:49ZJohannes Rankejranke@uni-bremen.de2021-11-17T11:59:49Zurn:sha1:d75378911cef79b3ed95daef71bf67db413d2ac8