mkin/tests/testthat/test_confidence.R, branch v1.0.3 Fitting kinetic models to chemical degradation data (also on github) https://erac.jrwb.de/mkin/atom?h=v1.0.3 2021-02-06T08:23:48Z Address issue revealed by additional tests on CRAN 2021-02-06T08:23:48Z Johannes Ranke jranke@uni-bremen.de 2021-02-06T08:23:48Z urn:sha1:df2beb74dcb6a65d6b066b55ccd7373dd79a6dab Remove tests relying on non-convergence of the FOMC fit to the FOCUS A dataset, as this is platform dependent. After the upgrade, the fit converges on this system as well, although neither ATLAS is used, nor R was configured disabling long doubles (these were the conditions under which the tests failed on CRAN). mixed.mmkin and test coverage 2020-12-08T21:08:38Z Johannes Ranke jranke@uni-bremen.de 2020-12-08T21:08:38Z urn:sha1:f606838c5310f365eea1c0d6421f5c3636a4dc79 use_of_ff = "max" for shorthand models like "SFO" 2020-05-28T10:24:32Z Johannes Ranke jranke@uni-bremen.de 2020-05-28T10:24:32Z urn:sha1:609bfe2fd7ecbdcad5f5d641f0db51541dcd6a4e Add a lack-of-fit test 2019-11-09T00:05:51Z Johannes Ranke jranke@uni-bremen.de 2019-11-09T00:05:51Z urn:sha1:20b9c584e7c43ecbb708459e531c24a1a4751e17 - Switch an example dataset in the test setup to a dataset with replicates, adapt tests - Skip the test for lrtest with an update specification as it does not only fail when pkgdown generates static help pages, but also in testthat Reorganize tests to reduce time on winbuilder 2019-10-31T10:47:23Z Johannes Ranke jranke@uni-bremen.de 2019-10-31T10:47:23Z urn:sha1:99947961be1cf0a7eed80426bc3d8cc6daa6d106 Add likelihood ratio test and other methods, fixes 2019-10-31T00:59:05Z Johannes Ranke jranke@uni-bremen.de 2019-10-31T00:55:01Z urn:sha1:7091d3738e7e55acb20edb88772b228f6f5b6c98 The likelihood ratio test method is lrtest, in addition, methods for update and residuals were added. Fix the cutoff for likelihood based intervals 2019-10-28T12:23:40Z Johannes Ranke jranke@uni-bremen.de 2019-10-28T12:23:40Z urn:sha1:bd761d879a95872f82e6d8f893634a61e122a938 The cutoff now matches what is given by Venzon and Moolgavkar (1988). Also, confidence intervals closely match intervals obtained with stats4::confint in the test case where an stats4::mle object is created from the likelihood function in one test case. Static documentation rebuilt by pkgdown Address some check and test failures 2019-10-26T20:38:11Z Johannes Ranke jranke@uni-bremen.de 2019-10-26T20:38:11Z urn:sha1:cb03bf1fb1e6326f06029969663f3399af96b05d parms and confint methods 2019-10-26T18:50:09Z Johannes Ranke jranke@uni-bremen.de 2019-10-26T18:50:09Z urn:sha1:7b7729694363515007193d1c3e29e9b76271abb3 The confint method can do profile likelihood based confidence intervals! Improve tests, remove geometric_mean 2019-10-21T13:31:59Z Johannes Ranke jranke@uni-bremen.de 2019-10-21T13:31:59Z urn:sha1:41a2a356bd9b61c90c04b47aee147bf837223028