mkin/tests/testthat/test_dmta.R, branch v1.2.4 Fitting kinetic models to chemical degradation data (also on github) https://erac.jrwb.de/mkin/atom?h=v1.2.4 2023-04-15T06:44:51Z Move preprocessing of DMTA data to the test setup 2023-04-15T06:44:51Z Johannes Ranke jranke@uni-bremen.de 2023-04-15T06:44:51Z urn:sha1:c705a294113ee74a8d408b8b51e4eb2b2822b3a7 Merge branch 'main' into custom_lsoda_call 2023-02-13T04:19:08Z Johannes Ranke jranke@uni-bremen.de 2023-02-13T04:19:08Z urn:sha1:8d1a84ac2190538ed3bac53a303064e281595868 Reduce testing on CRAN servers 2022-11-16T21:44:34Z Johannes Ranke jranke@uni-bremen.de 2022-11-16T21:44:34Z urn:sha1:90354f5cd9e095f9ef98424689a2716770b248d4 We get about 25% performance gain 2022-11-16T08:15:36Z Johannes Ranke jranke@uni-bremen.de 2022-11-16T08:15:36Z urn:sha1:51d63256a7b3020ee11931d61b4db97b9ded02c0 with the custom lsoda call, avoiding repeated getNativeSymbolInfo calls. It's just that we should not be calling foreign functions from different packages, because the may change without notice. Using getNativeSymbolInfo for "call_lsoda" avoids the CRAN note, and a similar call could probably be used for "unlock_solver", avoiding the NOTE in checks for cran, but we should not do this in a CRAN package. Avoid using multiple processes on CRAN check machines 2022-03-08T10:45:42Z Johannes Ranke jranke@uni-bremen.de 2022-03-08T04:37:49Z urn:sha1:48a532256cfe466f082c191956535045e85ea929 Remove nlmixr interface for release of mkin 1.1.0 2022-03-07T13:55:21Z Johannes Ranke jranke@uni-bremen.de 2022-03-07T11:03:40Z urn:sha1:7035cde3a53781721fe15a8893fdf328c789bdd2 I am postponing my attempts to get the nlmixr interface to CRAN, given some problems with nlmixr using R-devel under Windows, see https://github.com/nlmixrdevelopment/nlmixr/issues/596 and https://github.com/r-hub/rhub/issues/512, which is fixed by the removal of nlmixr from the testsuite. For the tests to be more platform independent, the biphasic mixed effects models test dataset was defined in a way that fitting should be more robust (less ill-defined). Skip some tests on CRAN to reduce load 2022-03-02T18:08:21Z Johannes Ranke jranke@uni-bremen.de 2022-03-02T18:08:21Z urn:sha1:b69d55795c77725f5eaa4c99f51f5e1083665872 In the hope that winbuilder will cope better then Make tests more platform independent, update docs 2022-03-02T17:03:54Z Johannes Ranke jranke@uni-bremen.de 2022-03-02T17:03:54Z urn:sha1:2bb59c88d49b193f278916ad9cc4de83c0de9604 Fix nlmixr fits with parallel metabolites 2022-03-02T12:11:49Z Johannes Ranke jranke@uni-bremen.de 2022-03-02T12:11:49Z urn:sha1:351248d07f810ccb6c497633a02cd48ee35526e6 Add some more tests 2022-03-01T10:52:03Z Johannes Ranke jranke@uni-bremen.de 2022-03-01T10:23:49Z urn:sha1:2b331b5f9420943ebe26b60361578038ec560f88