mkin/tests/testthat/test_error_models.R, branch v0.9.49.5Fitting kinetic models to chemical degradation data (also on github)https://erac.jrwb.de/mkin/atom?h=v0.9.49.52019-07-04T06:10:33ZAddress failures of CRAN checks, improve NEWS2019-07-04T06:10:33ZJohannes Rankejranke@uni-bremen.de2019-07-04T06:10:33Zurn:sha1:7e8d788d298b8e1492fd8f62d88456e99e0f5992
Static documentation rebuilt by pkgdown
Skip a test on CRAN/winbuilder2019-07-03T15:40:27ZJohannes Rankejranke@uni-bremen.de2019-07-03T15:40:27Zurn:sha1:d004cfb133b2b38808a736916152b85c5df6568f
The test uses multiple cores in order to complete within a reasonable time
Adapt tests to new algorithms and output2019-06-05T13:45:31ZJohannes Rankejranke@uni-bremen.de2019-06-05T13:45:31Zurn:sha1:4b323789265213bd65165873e7efe5e45a579275
One of the tests exceeded the number of iterations when using the
d_3 error model algorithm, so only use "direct" in this case.
Fix a bug introduced in the last commit2019-06-04T19:10:58ZJohannes Rankejranke@uni-bremen.de2019-06-04T19:10:58Zurn:sha1:307a317666b8a1cdfe2293371ad8671403680a36Additional algorithm "d_c", more tests, docs2019-06-04T13:09:28ZJohannes Rankejranke@uni-bremen.de2019-06-04T13:09:28Zurn:sha1:95178837d3f91e84837628446b5fd468179af2b9
The new algorithm tries direct optimization of the likelihood, as well
as a three step procedure. In this way, we consistently get the
model with the highest likelihood for SFO, DFOP and HS for all 12
new test datasets.
Algorithms direct, two-, three-, fourstep, IRLS2019-06-04T09:18:56ZJohannes Rankejranke@uni-bremen.de2019-06-04T09:15:52Zurn:sha1:9a96391589fef9f80f9c6c4881cc48a509cb75f2
All of them are working now and allow for comparison
Based on SFO, DFOP and HS fits to twelve test datasets, only
the combination of direct and threestep is needed to find
the lowest AIC
Status von Samstag morgen - untested2019-06-03T05:56:44ZJohannes Rankejranke@uni-bremen.de2019-06-03T05:56:44Zurn:sha1:b6ea4f22fc1b6d1caea29f6b1e44774d14d6697cPrepare for CRAN release2019-05-02T15:51:07ZJohannes Rankejranke@uni-bremen.de2019-05-02T15:07:55Zurn:sha1:a4ca3451f1b5c37d10c6a41cb18a99b1631e8aa2
- Skip long running tests on CRAN as well to avoid timeout on winbuilder
- Don't install benchmark results in the package, they are only needed
in the git repository
- Don't run example in man/add_err.Rd as it takes > 10 s on winbuilder
- Rebuild docs
Improve tests2019-05-02T14:02:35ZJohannes Rankejranke@uni-bremen.de2019-05-02T14:02:35Zurn:sha1:ce9399d08a05fffe8b003386c445f5ceab25dde5
- Improve control of the number of cores
- Reduce the precision of the correlation matrix in the test summary
output, as the exact results are platform dependent
Adapt tests, vignettes and examples2019-04-10T08:17:35ZJohannes Rankejranke@uni-bremen.de2019-04-10T08:17:35Zurn:sha1:194659fcaccdd1ee37851725b8c72e99daa3a8cf
- Write the NEWS
- Static documentation rebuilt by pkgdown
- Adapt mkinerrmin
- Fix (hopefully all) remaining problems in mkinfit