mkin/tests/testthat/test_error_models.R, branch v0.9.49.7 Fitting kinetic models to chemical degradation data (also on github) https://erac.jrwb.de/mkin/atom?h=v0.9.49.7 2019-11-01T11:45:29Z Update link, increase tolerance of a test for Travis 2019-11-01T11:45:29Z Johannes Ranke jranke@uni-bremen.de 2019-11-01T11:45:29Z urn:sha1:e7c65ee913d4a84da0957d2ebb89abfbc444de56 Fix bug in yesterdays release, add methods for BIC 2019-11-01T11:19:03Z Johannes Ranke jranke@uni-bremen.de 2019-11-01T11:19:03Z urn:sha1:bbb74d4f60033899cd5cdd36aa70f157bc52209e Improved visual testing 2019-10-22T08:13:16Z Johannes Ranke jranke@uni-bremen.de 2019-10-22T08:13:16Z urn:sha1:f8d45402477a588f773f6fd300f3d4e914648773 Skip an offensive test on Travis 2019-10-21T17:52:22Z Johannes Ranke jranke@uni-bremen.de 2019-10-21T17:52:22Z urn:sha1:23258f4aa2faceb7b7f23c5386b2803b3a8e16ca Improve some plotting routines, more tests 2019-10-21T16:54:37Z Johannes Ranke jranke@uni-bremen.de 2019-10-21T16:52:24Z urn:sha1:e09f726134ee273b6b191c1ec6465e6f701b082b Static documentation rebuilt by pkgdown Improve tests, remove geometric_mean 2019-10-21T13:31:59Z Johannes Ranke jranke@uni-bremen.de 2019-10-21T13:31:59Z urn:sha1:41a2a356bd9b61c90c04b47aee147bf837223028 Refactor mkinfit, infrastructure work 2019-10-21T10:11:34Z Johannes Ranke jranke@uni-bremen.de 2019-10-21T10:11:34Z urn:sha1:7624a2b8398b4ad665a3b0b622488e1893a5ee7c mkinfit objects now include an ll() function to calculate the log-likelihood. Part of the code was refactored, hopefully making it easier to read and maintain. IRLS is currently the default algorithm for the error model "obs", for no particular reason. This may be subject to change when I get around to investigate. Slow tests are now in a separate subdirectory and will probably only be run by my own Makefile target. Formatting of test logs is improved. Roundtripping error model parameters works with a precision of 10% when we use lots of replicates in the synthetic data (see slow tests). This is not new in this commit, but as I think it is reasonable this closes #7. Address failures of CRAN checks, improve NEWS 2019-07-04T06:10:33Z Johannes Ranke jranke@uni-bremen.de 2019-07-04T06:10:33Z urn:sha1:7e8d788d298b8e1492fd8f62d88456e99e0f5992 Static documentation rebuilt by pkgdown Skip a test on CRAN/winbuilder 2019-07-03T15:40:27Z Johannes Ranke jranke@uni-bremen.de 2019-07-03T15:40:27Z urn:sha1:d004cfb133b2b38808a736916152b85c5df6568f The test uses multiple cores in order to complete within a reasonable time Adapt tests to new algorithms and output 2019-06-05T13:45:31Z Johannes Ranke jranke@uni-bremen.de 2019-06-05T13:45:31Z urn:sha1:4b323789265213bd65165873e7efe5e45a579275 One of the tests exceeded the number of iterations when using the d_3 error model algorithm, so only use "direct" in this case.