mkin/tests/testthat/test_multistart.R, branch v1.2.4Fitting kinetic models to chemical degradation data (also on github)https://erac.jrwb.de/mkin/atom?h=v1.2.42022-12-06T09:33:24ZSome parplot improvements2022-12-06T09:33:24ZJohannes Rankejranke@uni-bremen.de2022-12-06T09:33:24Zurn:sha1:478c6d5eec4c84b22b43adcbdf36888b302ead00
llquant argument, improved legend text, tests
Move two saem fits from setup script to skipped tests2022-11-18T21:11:02ZJohannes Rankejranke@uni-bremen.de2022-11-18T21:11:02Zurn:sha1:5ec8e1bad1aa7d79ee9c19bdd50be07f81a14278
Save winbuilder/CRAN check time...
Make mixed model test data permanent to ensure reproducibility2022-11-18T18:14:47ZJohannes Rankejranke@uni-bremen.de2022-11-18T18:14:47Zurn:sha1:5364f037a72863ef5ba81e14ba4417f68fd389f9
To ensure that tests on different platforms work on the same data, the
mixed modelling test data previosly generated in
tests/testthat/setup_script.R were generated once using the script in
inst/dataset/generation/ds_mixed.R, and are now distributed with the
package.
Pass error.init to saemix_model, show in parplot2022-11-18T07:37:40ZJohannes Rankejranke@uni-bremen.de2022-11-18T07:37:40Zurn:sha1:df0cff4b829f1abf62f037591a24a8019174dd0a
Due to an oversight, error.init was not really passed to saemix_model in
saem.mmkin. The new initial values were reverted to c(1, 1), in order to
avoid changing the test results. Initial values for error model
parameters are now shown in parplot.multistart.
Reduce testing on CRAN servers2022-11-16T21:44:34ZJohannes Rankejranke@uni-bremen.de2022-11-16T21:44:34Zurn:sha1:90354f5cd9e095f9ef98424689a2716770b248d4Address platform dependence that surfaced on winbuilder2022-11-16T12:52:08ZJohannes Rankejranke@uni-bremen.de2022-11-16T12:50:54Zurn:sha1:5889cd78376e244f38e6c5acba8ffbc46e18f803Automatic starting parameters for saem.mmkin2022-11-14T19:03:42ZJohannes Rankejranke@uni-bremen.de2022-11-14T19:03:42Zurn:sha1:21ad91256dc29423bd905de5c298fd23862b1f3b
For the case of mkin transformations. This gives faster convergence,
and appears to avoid problems with numeric ODE solutions
Rename parhist to parplot and make it generic2022-10-28T11:39:15ZJohannes Rankejranke@uni-bremen.de2022-10-28T11:39:15Zurn:sha1:f820bf5b91be0f589de16c3e3250f5f79672df75
That parhist name was not the brightest idea, as it does
not show histograms.
Don't test parhist and llhist on travis, docs2022-10-26T07:36:44ZJohannes Rankejranke@uni-bremen.de2022-10-26T07:36:44Zurn:sha1:d25974f643ee46b7cd5ccd8331dd7bb0b14ab27aReduced sfo model for multistart.saem.mkin tests2022-10-26T07:07:04ZJohannes Rankejranke@uni-bremen.de2022-10-26T07:07:04Zurn:sha1:3c5b2596daef4ed0ee5c38a7141fdf48dbe7c070