mkin/tests/testthat/test_saemix_parent.R, branch v1.2.4 Fitting kinetic models to chemical degradation data (also on github) https://erac.jrwb.de/mkin/atom?h=v1.2.4 2022-11-18T19:35:06Z Use cluster with two cores to reduce windows check time 2022-11-18T19:35:06Z Johannes Ranke jranke@uni-bremen.de 2022-11-18T19:35:06Z urn:sha1:b6b7e387261e5483f1bdfafaaa975e2f24c6567c Make mixed model test data permanent to ensure reproducibility 2022-11-18T18:14:47Z Johannes Ranke jranke@uni-bremen.de 2022-11-18T18:14:47Z urn:sha1:5364f037a72863ef5ba81e14ba4417f68fd389f9 To ensure that tests on different platforms work on the same data, the mixed modelling test data previosly generated in tests/testthat/setup_script.R were generated once using the script in inst/dataset/generation/ds_mixed.R, and are now distributed with the package. Automatic starting parameters for saem.mmkin 2022-11-14T19:03:42Z Johannes Ranke jranke@uni-bremen.de 2022-11-14T19:03:42Z urn:sha1:21ad91256dc29423bd905de5c298fd23862b1f3b For the case of mkin transformations. This gives faster convergence, and appears to avoid problems with numeric ODE solutions Fix illparms tests 2022-11-01T09:39:29Z Johannes Ranke jranke@uni-bremen.de 2022-11-01T09:39:29Z urn:sha1:0c18f5de9b2f948d0b5e22a3b3deed16d64d8006 Improved printing for illparms() 2022-11-01T08:46:33Z Johannes Ranke jranke@uni-bremen.de 2022-11-01T08:46:33Z urn:sha1:fd4bd411df739903279d8b52faa19d5059afbda7 For the case of single fits and no ill-defined parameters found Really test anova output, test covariates 2022-10-26T12:13:09Z Johannes Ranke jranke@uni-bremen.de 2022-10-26T12:13:09Z urn:sha1:0e9220c6b9132602a3d69e4be582a02da8b07822 Reduced sfo model for multistart.saem.mkin tests 2022-10-26T07:07:04Z Johannes Ranke jranke@uni-bremen.de 2022-10-26T07:07:04Z urn:sha1:3c5b2596daef4ed0ee5c38a7141fdf48dbe7c070 Make multistart work with testthat scopes 2022-10-25T22:57:40Z Johannes Ranke jranke@uni-bremen.de 2022-10-25T22:57:40Z urn:sha1:0d8521f3f60082f0fd27da00a7ac8bcef9ee5ba0 Also skip long-running test with saem using the analytical from mkin Change DFOP mixed model data in tests, updates 2022-10-25T19:45:30Z Johannes Ranke jranke@uni-bremen.de 2022-10-25T19:45:30Z urn:sha1:a8ff8bed72dc537fe70cf2995ea769d3f519f877 Address platform dependencies that surfaced on travis 2022-10-25T14:12:39Z Johannes Ranke jranke@uni-bremen.de 2022-10-25T14:12:39Z urn:sha1:92bd47bf45cebe660c5e7f392a4ee19f704d8a19