mkin/tests/testthat, branch v1.2.6 Fitting kinetic models to chemical degradation data (also on github) https://erac.jrwb.de/mkin/atom?h=v1.2.6 2023-08-17T07:23:27Z Update tests without any openblas variant 2023-08-17T07:23:27Z Johannes Ranke jranke@uni-bremen.de 2023-08-17T07:23:27Z urn:sha1:bbed90f6a4010ac0b911ec13c04ae06eebc74bb5 This even a bit faster. Update platform specific tests on desktop 2023-08-17T07:03:53Z Johannes Ranke jranke@uni-bremen.de 2023-08-17T07:03:53Z urn:sha1:9901675e499226eec6304113eb5ffa3b900942c2 Point to the dmta pathway vignette in the dmta test 2023-08-17T06:53:15Z Johannes Ranke jranke@uni-bremen.de 2023-08-17T06:53:15Z urn:sha1:448e47e756c0c67fc658f93575092973aa455fb1 Mesotrione data and vignette 2023-08-04T11:27:41Z Johannes Ranke jranke@uni-bremen.de 2023-08-04T11:27:41Z urn:sha1:804a5cb47fcdc823d41c585729ace151b283ca65 The vignette illustrates pH dependent degradation (covariate modelling) with some detail for the parent compound. Also, a bug in the saem method of the illparms function was fixed, which prevented to find ill-defined parameters in cases where e.g. slopes of covariate models have a negative estimate. Skip another test on CRAN to save CPU cycles 2023-04-16T12:33:14Z Johannes Ranke jranke@uni-bremen.de 2023-04-16T12:33:14Z urn:sha1:2ad43c6f186d582c0f608b0c656267b5d5a0b450 Skip the Eigenvalue based saem test 2023-04-16T04:22:11Z Johannes Ranke jranke@uni-bremen.de 2023-04-16T04:19:00Z urn:sha1:76bc0fead33a63168a5e8d77a6c4b82426815d70 It took too long, and this solution method is not recommended. We are saving 140 seconds here on my system, so more time is saved on travis. Increase test coverage 2023-04-15T18:00:00Z Johannes Ranke jranke@uni-bremen.de 2023-04-15T18:00:00Z urn:sha1:f215080efba4097ccdaa2d1208edd36c26d7978a Also, using mkin analytical solutions for more than one observed variable is not supported (but could be if out_values would be reordered). Fix logic in test 2023-04-15T14:12:52Z Johannes Ranke jranke@uni-bremen.de 2023-04-15T14:12:52Z urn:sha1:c1e5f339ff1abccbe4a284cdc9fba3debcb2c586 Fix platform dependence in test 2023-04-15T13:40:05Z Johannes Ranke jranke@uni-bremen.de 2023-04-15T13:40:05Z urn:sha1:a71d7a0817f213699e06128c6d1729dc6a7ef76f Make predefined symbols safer 2023-04-15T13:35:06Z Johannes Ranke jranke@uni-bremen.de 2023-04-15T13:35:06Z urn:sha1:b0b710ee9f9bb9bbe9708676d0c5822465e02203 We still need to create a parallel processing cluster _after_ creating a compiled model that is moved to a user defined location, at least I did not find another way to make it work. This is not a problem with parallel processing without a cluster, which is not available on Windows.