mkin/tests, branch mainFitting kinetic models to chemical degradation data (also on github)https://erac.jrwb.de/mkin/atom?h=main2026-09-07T11:45:39ZAdd DTx function, check and test2026-09-07T11:45:39ZRanke Johannesjohannes.ranke@agroscope.admin.ch2026-09-07T11:45:39Zurn:sha1:48d9cad339394c3aa0d730d9a27b1c0680ce13e8
The tolerance of one test had to be increased in test_deSolve.R,
and four vdiffr snapshots with negligible differences were updated.
Tests run with a maximum of 16 cores when running in the Agroscope
Apptainer environment.
Facilitate centering covariates2025-09-12T20:16:13ZJohannes Rankejohannes.ranke@jrwb.de2025-09-12T20:16:13Zurn:sha1:17af45b984d348505527140470c7fff204748ea6
The motivation for this is to obtain confidence intervals for
covariate dependent parameters that are valid for a median/mean
value of the covariate.
Implementation by adding an argument to the 'saem' function, and
adapting the relevant functions working with 'saem' objects.
Vignettes, the template and tests were updated to use the new functionality.
Fix solution type "deSolve" for a special case2025-02-16T16:29:28ZJohannes Rankejohannes.ranke@jrwb.de2025-02-16T16:27:18Zurn:sha1:4f62f39b8979cb3a5c52d65d425e530dc0770665
The special case occurs if not observed data for time zero
are available. Fixes #16. Write NEWS and update docs.
A lot of html was regenerated, because I had checked out
the main branch in between, which made pkgdown believe that
I have changed the help files.
Some test improvements2025-02-16T13:16:15ZJohannes Rankejohannes.ranke@jrwb.de2025-02-16T12:39:38Zurn:sha1:44c30938872bd7cc80a4c84dd4db593e26000fce
- Another test for analytical solution of SFO-SFO
This is a bit redundant, because we have tests using those solutions
in test_analytical.R, where mkinfit is used. But nevertheless, it is
good to know that using mkinpredict directly also passes the test.
- A more explicit testing of the warning message that is issued
if a use turns of transformation of formation fractions
Axis legend formatting, update vignettes2025-02-13T18:20:04ZJohannes Rankejohannes.ranke@jrwb.de2025-02-13T15:30:31Zurn:sha1:6476f5f49b373cd4cf05f2e73389df83e437d597Improve legend in parplots of multistart objects2025-02-13T14:46:49ZJohannes Rankejohannes.ranke@jrwb.de2025-02-13T14:46:49Zurn:sha1:e8db0cdb378fe4f429f935221c4eb50b178b84a5Restrict number of cores for CRAN checks2025-02-13T13:57:25ZJohannes Rankejohannes.ranke@jrwb.de2025-02-13T13:57:25Zurn:sha1:4c3ce8a3e77969162a6717cb2c5d2dd9f02ef1c9Make sure test work on my desktop, skip more tests on travis2024-07-28T07:26:20ZJohannes Rankejohannes.ranke@jrwb.de2024-07-28T07:25:18Zurn:sha1:272b3863d1463dfaf62c6e06ea22610c0540237fFix bug in R/create_deg_func.R2024-04-27T17:23:42ZJohannes Rankejranke@uni-bremen.de2024-04-27T17:22:10Zurn:sha1:e18c8da322ddb11105b7fdf93e9dd538673fb946
Closes #13
Bump version, fix test from last commit, check and test2023-11-23T05:17:28ZJohannes Rankejranke@uni-bremen.de2023-11-23T05:17:28Zurn:sha1:43af185533b11327368148a44e9295ea3eb3abb1