mkin/vignettes/FOCUS_D.Rmd, branch v0.9.46.1Fitting kinetic models to chemical degradation data (also on github)https://erac.jrwb.de/mkin/atom?h=v0.9.46.12016-11-17T17:23:31ZRemove trailing whitespace, clean headers2016-11-17T17:23:31ZJohannes Rankejranke@uni-bremen.de2016-11-17T17:14:32Zurn:sha1:f3f415520c89f9d8526bf6fadc862ebd44be220d
Also ignore test.R in the top level directory, as it is not meant to
be public
Use plot_sep in FOCUS D vignette2016-11-17T16:38:13ZJohannes Rankejranke@uni-bremen.de2016-11-17T16:38:13Zurn:sha1:38194642f58a798207663d469e8241265de95717Update way to specify encoding, improve FOCUS_L TOC2016-10-22T15:55:12ZJohannes Rankejranke@uni-bremen.de2016-10-22T15:55:12Zurn:sha1:1c81442284a25a9cf4979d9236ec0c1a1cf8a8ddAttempts to reduce vignette size2016-06-28T06:06:03ZJohannes Rankejranke@uni-bremen.de2016-06-28T06:06:03Zurn:sha1:48a314feb6538774504c2b118cdbaededd2eb25b
Reducing the size of some figures and switching of retina figures
in the preamble only gives a small decrease in vignette size,
but may be enough to get the size of the doc directory below 5 MB
to avoid the NOTE in the corresponding check (which I did not get
locally, nor on winbuilder using r-devel.
Small documenation changes2015-06-23T09:40:36ZJohannes Rankejranke@uni-bremen.de2015-06-23T09:21:49Zurn:sha1:6c62c42eb57631aa0f4ab7e008621ffb519bd7beVignettes rebuilt by staticdocs::build_site() for static documentation on r-forge2015-06-22T21:03:28ZJohannes Rankejranke@uni-bremen.de2015-06-22T21:03:28Zurn:sha1:00d164d6d40172c6f8b83578fd30ca28f8c378c7Version bump, correct benchmark in vignette/compiled_models2015-06-22T18:31:22ZJohannes Rankejranke@uni-bremen.de2015-06-22T04:09:00Zurn:sha1:01d9de6ff165c64ffc4366f2eeb3d2649b5c74c0
Reorganisation of the vignette generation in the Makefile.
Improved YAML header in the R markdown vignettes.
Rebuilt vignettes with the package installed.
Low-level generation of compiled models2015-06-20T01:59:56ZJohannes Rankejranke@uni-bremen.de2015-06-19T23:06:24Zurn:sha1:062b9cc1d084e8bb5e552076fc48ade4b3050644
As it is unclear if and when ccSolve will be published on CRAN,
the generation, compilation and use of the C version of the
system of differential equations was developed for mkin, inspired and
guided by the code from the ccSolve package. Many thanks again to
Karline Soetaert for all of her work on this and other R packages.
Now all model types, including the Hockey-Stick model for the parent
compund and the IORE model for parent and/or metabolites can be compiled.
Add a simple vignette with an evaluation of FOCUS D2015-06-05T11:41:44ZJohannes Rankejranke@uni-bremen.de2015-06-05T11:41:44Zurn:sha1:58f46265cec1c3f51a6d2507e0f3e3b59243cc82