mkin/vignettes/compiled_models.Rmd, branch v0.9.42 Fitting kinetic models to chemical degradation data (also on github) https://erac.jrwb.de/mkin/atom?h=v0.9.42 2016-03-24T07:28:23Z Address feedback from CRAN submission 2016-03-24T07:28:23Z Johannes Ranke jranke@uni-bremen.de 2016-03-24T06:26:55Z urn:sha1:d432a48c8e7cc2df95d4952af415f18809f60409 - Put the CRAN URL that the badge points to into canonical form. I had missed the requirement to use the canonical form before, as the R CMD check message complained about a (possibily) invalid URL, so I overlooked the explanation later in the check log. Thanks to Uwe for his patience. Fix checked with winbuilder. - Slightly reduced the build time for the compiled_models vignette by skipping the warm-up. 3 repetitions are necessary for the autoplot method to work Add plots to compiled_models vignette, rebuild staticdocs 2015-11-13T10:20:59Z Johannes Ranke jranke@uni-bremen.de 2015-11-13T10:01:49Z urn:sha1:6f596ecec2c54d7d91cf3ca16b8643b64b903e57 Re-add the compiled models vignette 2015-11-09T07:52:01Z Johannes Ranke jranke@uni-bremen.de 2015-11-09T07:52:01Z urn:sha1:415ca2bea5d5c3815bd9f8fa1566cec5bb3fc775 This was accidentally deleted in 438a889c37ffdf8f0c6585092da6abdb63b4575e on June 30! Improve calculation of DT90 in endpoints(), check and test 2015-06-30T12:17:13Z Johannes Ranke jranke@uni-bremen.de 2015-06-30T12:17:13Z urn:sha1:438a889c37ffdf8f0c6585092da6abdb63b4575e Small documenation changes 2015-06-23T09:40:36Z Johannes Ranke jranke@uni-bremen.de 2015-06-23T09:21:49Z urn:sha1:6c62c42eb57631aa0f4ab7e008621ffb519bd7be Vignettes rebuilt by staticdocs::build_site() for static documentation on r-forge 2015-06-22T21:03:28Z Johannes Ranke jranke@uni-bremen.de 2015-06-22T21:03:28Z urn:sha1:00d164d6d40172c6f8b83578fd30ca28f8c378c7 Version bump, correct benchmark in vignette/compiled_models 2015-06-22T18:31:22Z Johannes Ranke jranke@uni-bremen.de 2015-06-22T04:09:00Z urn:sha1:01d9de6ff165c64ffc4366f2eeb3d2649b5c74c0 Reorganisation of the vignette generation in the Makefile. Improved YAML header in the R markdown vignettes. Rebuilt vignettes with the package installed. Rebuild vignettes with the released package installed 2015-06-21T16:16:08Z Johannes Ranke jranke@uni-bremen.de 2015-06-21T16:16:08Z urn:sha1:5bd8716b2e4c880b798d1e5e231d49816bbdebd1 Low-level generation of compiled models 2015-06-20T01:59:56Z Johannes Ranke jranke@uni-bremen.de 2015-06-19T23:06:24Z urn:sha1:062b9cc1d084e8bb5e552076fc48ade4b3050644 As it is unclear if and when ccSolve will be published on CRAN, the generation, compilation and use of the C version of the system of differential equations was developed for mkin, inspired and guided by the code from the ccSolve package. Many thanks again to Karline Soetaert for all of her work on this and other R packages. Now all model types, including the Hockey-Stick model for the parent compund and the IORE model for parent and/or metabolites can be compiled. Add a vignette showing the performance of compiled models 2015-04-17T22:06:38Z Johannes Ranke jranke@uni-bremen.de 2015-04-17T22:06:38Z urn:sha1:a26b44d15c11ebb41083fc2efab0cc91a027b55b