mkin/vignettes/mkin.html, branch v1.0.2Fitting kinetic models to chemical degradation data (also on github)https://erac.jrwb.de/mkin/atom?h=v1.0.22020-11-27T20:19:19ZImproved way to have persistent DLLs for mkinmod2020-11-27T20:19:19ZJohannes Rankejranke@uni-bremen.de2020-11-27T17:35:56Zurn:sha1:1e3fd1bef2a0ec1c8b73fcfefdd62fd3463bc87c
Depends on inline >= 0.16.2 (including the bug fixes from
eddelbuettel/inline#18), which provides 'moveDLL' to store the DLL for a
compiled function in a safe place in case the argument 'dll_dir' is
specified in the call to 'mkinmod'.
Huge thanks to Dirk @eddelbuettel for his review and support
for the work on the inline package.
Support storing mkinmod compiled code as CFunc objects2020-11-24T00:46:57ZJohannes Rankejranke@uni-bremen.de2020-11-20T18:43:46Zurn:sha1:503441b0a958c1df50df0ee7cfc3bde4ea1b1865
With automatic reloading in mkinfit and mkinpredict in case the
DLL is not loaded and the original DLL path has been cleaned up.
Depends on jranke/inline@974bdea04fcedfafaab231e6f359c88270b56cb9
See inline#13
Reintroduce saemix helper functions2020-10-15T08:25:48ZJohannes Rankejranke@uni-bremen.de2020-10-15T08:25:48Zurn:sha1:954f7514144a281b73e9b47ac88a6b13e8799f31Fix issues for release2020-10-08T07:31:35ZJohannes Rankejranke@uni-bremen.de2020-10-08T07:31:35Zurn:sha1:bc3825ae2d12c18ea3d3caf17eb23c93fef180b8Use all cores per default, confint tolerance2020-05-26T16:52:01ZJohannes Rankejranke@uni-bremen.de2020-05-26T16:38:51Zurn:sha1:675a733fa2acc08daabb9b8b571c7d658f281f73
Also, use more intelligent starting values for the variance of the
random effects for saemix. While this does not appear to speed up
the convergence, it shows where this variance is greatly reduced
by using mixed-effects models as opposed to the separate independent
fits.
Improve documentation, now using a spell checker2020-05-12T08:58:25ZJohannes Rankejranke@uni-bremen.de2020-05-12T08:58:25Zurn:sha1:01284e456dc6df8e064a7a42f194fcd81d9ce7a1Avoid merge() and data.frame() in cost function2020-05-11T03:18:32ZJohannes Rankejranke@uni-bremen.de2020-05-11T03:15:19Zurn:sha1:234c9059a95e104917e488a6ddd2313234a96cdc
also for deSolve and eigenvalue based solutions. This noticeably increases
performance for these methods, see test.log and benchmark vignette.
Static documentation rebuilt by pkgdown2019-07-05T13:57:24ZJohannes Rankejranke@uni-bremen.de2019-07-05T13:57:24Zurn:sha1:4596667b19f032232ceb8f3f762aaad5d69c15beUpdate README and introductory vignette2019-07-04T11:04:38ZJohannes Rankejranke@uni-bremen.de2019-07-04T11:04:38Zurn:sha1:eed28a846b6b6deb67e07fddf6e62d299a6547bbRemove reference to archived kinfit package2019-05-02T16:54:22ZJohannes Rankejranke@uni-bremen.de2019-05-02T16:54:22Zurn:sha1:6ddb7575f37d9d534f014cbd105b2f07660d59c6
from vignettes/mkin.Rmd
Static documentation rebuilt by pkgdown