mkin/vignettes/web_only/multistart.html, branch v1.2.10Fitting kinetic models to chemical degradation data (also on github)https://erac.jrwb.de/mkin/atom?h=v1.2.102023-04-20T19:40:08ZUpdate vignettes in dev docs2023-04-20T19:40:08ZJohannes Rankejranke@uni-bremen.de2023-04-20T19:40:08Zurn:sha1:78d34a8918edcb91982a3886e4898a63898f52c3
After the post-release fixes to the release version online docs
Merge branch 'v1.2.3_pkgdown'2023-04-20T18:17:12ZJohannes Rankejranke@uni-bremen.de2023-04-20T18:17:12Zurn:sha1:7b7c4bf493ba15824ea43bed764661678b4aca03Fix and rebuild documentation, see NEWS2023-04-20T18:03:32ZJohannes Rankejranke@uni-bremen.de2023-04-20T17:53:28Zurn:sha1:9ae42bd20bc2543a94cf1581ba9820c2f9e3afbd
I had to fix the two pathway vignettes, as they did not work with
the released version any more. So they and the multistart vignette
which got some small fixes as well were rebuilt.
Complete rebuild of the online docs with the released version. The
documentation of the 'hierarchial_kinetics' format had to be fixed
as well.
Improve docs of multistart method2023-04-17T17:39:09ZJohannes Rankejranke@uni-bremen.de2023-04-17T17:39:09Zurn:sha1:004fce2520d6889d82226e21bc443426e81d93f2Update multistart example code and vignette2022-10-26T08:36:19ZJohannes Rankejranke@uni-bremen.de2022-10-26T08:36:19Zurn:sha1:08e600c0eea6153b433659c08ea49aead5ffd932Update vignette and static docs2022-09-28T14:47:48ZJohannes Rankejranke@uni-bremen.de2022-09-28T14:47:48Zurn:sha1:05df90d8328b804ad1efe92c81e9ace491b386ecImprove parhist and llhist2022-09-19T10:55:00ZJohannes Rankejranke@uni-bremen.de2022-09-19T10:55:00Zurn:sha1:7a3f2ee22419608a8a634fd4d71d7176303b2f41
In particular, adapt the display of parameter boxplots
for saem fits using mkin transformations to the way
used for saem fits using saemix transformations, i.e.
always show parameters on the natural scale, and normalised them by
dividing by the median from the multiple runs.
Add llhist to the multistart vignette2022-09-16T19:31:32ZJohannes Rankejranke@uni-bremen.de2022-09-16T19:31:32Zurn:sha1:062a1be18677a4e83a64d23622b5214258d9bc7dImprove multistart documentation, bugfix2022-09-16T19:06:54ZJohannes Rankejranke@uni-bremen.de2022-09-16T19:06:54Zurn:sha1:fd205e13061de8abc595d266f3b0c7650773d442
- Split out llhist and parhist documentation
- Add example code for multistart
- Create a multistart vignette, because the example code fails when run
by pkgdown
- Fix multistart for the case of mkin transformations in the saem fit