From e0c130005ee7adbac9b832ea8157712419d51b7e Mon Sep 17 00:00:00 2001 From: Ranke Johannes Date: Mon, 22 Jun 2026 18:01:11 +0200 Subject: Update static docs --- docs/reference/GUS.md | 113 ++++++++++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 113 insertions(+) create mode 100644 docs/reference/GUS.md (limited to 'docs/reference/GUS.md') diff --git a/docs/reference/GUS.md b/docs/reference/GUS.md new file mode 100644 index 0000000..b81f464 --- /dev/null +++ b/docs/reference/GUS.md @@ -0,0 +1,113 @@ +# Groundwater ubiquity score based on Gustafson (1989) + +The groundwater ubiquity score GUS is calculated according to the +following equation \$\$GUS = \log\_{10} DT50\_{soil} (4 - \log\_{10} +K\_{oc})\$\$ + +## Usage + +``` r +GUS(...) + +# S3 method for class 'numeric' +GUS(DT50, Koc, ...) + +# S3 method for class 'chent' +GUS( + chent, + degradation_value = "DT50ref", + lab_field = "laboratory", + redox = "aerobic", + sorption_value = "Kfoc", + degradation_aggregator = geomean, + sorption_aggregator = geomean, + ... +) + +# S3 method for class 'GUS_result' +print(x, ..., digits = 1) +``` + +## Arguments + +- ...: + + Included in the generic to allow for further arguments later. + Therefore this also had to be added to the specific methods. + +- DT50: + + Half-life of the chemical in soil. Should be a field half-life + according to Gustafson (1989). However, leaching to the sub-soil can + not completely be excluded in field dissipation experiments and + Gustafson did not refer to any normalisation procedure, but says the + field study should be conducted under use conditions. + +- Koc: + + The sorption constant normalised to organic carbon. Gustafson does not + mention the nonlinearity of the sorption constant commonly found and + usually described by Freundlich sorption, therefore it is unclear at + which reference concentration the Koc should be observed (and if the + reference concentration would be in soil or in porewater). + +- chent: + + If a chent is given with appropriate information present in its chyaml + field, this information is used, with defaults specified below. + +- degradation_value: + + Which of the available degradation values should be used? + +- lab_field: + + Should laboratory or field half-lives be used? This defaults to lab in + this implementation, in order to avoid double-accounting for mobility. + If comparability with the original GUS values given by + Gustafson (1989) is desired, non-normalised first-order field + half-lives obtained under actual use conditions should be used. + +- redox: + + Aerobic or anaerobic degradation data + +- sorption_value: + + Which of the available sorption values should be used? Defaults to + Kfoc as this is what is generally available from the European + pesticide peer review process. These values generally use a reference + concentration of 1 mg/L in porewater, that means they would be + expected to be Koc values at a concentration of 1 mg/L in the water + phase. + +- degradation_aggregator: + + Function for aggregating half-lives + +- sorption_aggregator: + + Function for aggregation Koc values + +- x: + + An object of class GUS_result to be printed + +- digits: + + The number of digits used in the print method + +## Value + +A list with the DT50 and Koc used as well as the resulting score of +class GUS_result + +## References + +Gustafson, David I. (1989) Groundwater ubiquity score: a simple method +for assessing pesticide leachability. *Environmental toxicology and +chemistry* **8**(4) 339–57. + +## Author + +Johannes Ranke -- cgit v1.2.3