From e0c130005ee7adbac9b832ea8157712419d51b7e Mon Sep 17 00:00:00 2001
From: Ranke Johannes
FOCUS_GW_scenarios_2012FOCUS (2012) Generic guidance for Tier 1 FOCUS ground water assessments. Version 2.1. @@ -130,7 +126,7 @@ http://focus.jrc.ec.europa.eu/gw/docs/Generic_guidance_FOCV2_1.pdf
While time weighted average (TWA) concentrations given in the examples -from the EFSA guidance from 2015 (p. 80) are be reproduced, this is not +from the EFSA guidance from 2015 (p. 80) can be reproduced, this is not true for the TWA concentrations given for the same example in the EFSA guidance from 2017 (p. 92).
According to the EFSA guidance (EFSA, 2017, p. 43), leaching should be @@ -306,7 +306,7 @@ doi:10.2903/j.efsa.2015.4093
read.TOXSWA_cwa.
+by read.TOXSWA_cwa.
read.TOXSWA_cwa.
Length one character vector holding the filename.
basedirbasedirLength one character vector holding the directory where the file came from.
zipfilezipfileIf not null, giving the path to the zip file from which the file was read.
segmentsegmentLength one integer, specifying for which segment the cwa data were read.
substancesubstanceThe TOXSWA name of the substance.
cwascwasDataframe holding the concentrations.
eventseventsList of dataframes holding the event statistics for each threshold.
windowswindowsMatrix of maximum time weighted average concentrations (TWAC_max) and areas under the curve in µg/day * h (AUC_max_h) or µg/day * d (AUC_max_d) for the requested moving window sizes in days.
TOXSWA_cwa$new()Create a TOXSWA_cwa object from a file
TOXSWA_cwa$new(
@@ -115,51 +114,43 @@ for the requested moving window sizes in days.
substance = "parent",
total = FALSE
)filenameThe filename
basedirbasedirThe directory to look in
zipfilezipfileOptional path to a zipfile holding the file
segmentsegmentEither "last" or the number of the segment for which to read the data
substancesubstanceThe TOXSWA substance name (for TOXSWA 4 or higher)
totaltotalShould total concentrations be read in? If FALSE, free concentrations are read
TOXSWA_cwa$get_events()Populate a datataframe with event information for the specified
threshold value. The resulting dataframe is stored in the events
field of the object.
print()clone()TOXSWA_cwa$clone()The objects of this class are cloneable with this method.
- -Functions that are independent of specific fate modelling areas
one_box()
plot(<one_box>)
sawtooth()
twa()
max_twa()
pfm_degradation()
SFO_actual_twa()
FOMC_actual_twa()
reexports set_nd_nq set_nd_nq_focus
TSCF()
@@ -113,8 +122,7 @@
-
- PEC_soil_mets()
soil_scenario_data_EFSA_2015
soil_scenario_data_EFSA_2017
PEC_FOMC_accu_rel()
EFSA_washoff_2017
@@ -160,8 +173,7 @@
-
- EFSA_GW_interception_2014
@@ -183,8 +196,7 @@
-
- drift_data_JKI
drift_parameters_focus
drift_percentages_rautmann()
PEC_sw_drainage_UK() drainage_date_UK()
PEC_sw_sed()
PEC_sw_focus()
chent_focus_sw()
FOCUS_Step_12_scenarios
PEC_sw_exposit_drainage()
PEC_sw_exposit_runoff()
perc_runoff_exposit
perc_runoff_reduction_exposit
TOXSWA_cwa
read.TOXSWA_cwa()
plot(<TOXSWA_cwa>)
@@ -290,8 +317,7 @@
Evaluating environmental fate properties
GUS() print(<GUS_result>)
@@ -313,8 +340,7 @@
-
- An object of type one_box
An object of type one_box
The method working directly on fitted mkinfit objects uses the
+
The method working directly on fitted mkinfit objects uses the equations given in the PEC soil section of the FOCUS guidance and is restricted SFO, FOMC and DFOP models and to the parent compound
When numeric, this is the half-life to be used for an exponential
decline. When a character string specifying a parent decline model is given
e.g. FOMC, parms must contain the corresponding parameters.
-If x is an mkinfit object, the decline is calculated from this
+If x is an mkinfit object, the decline is calculated from this
object.
The initial amount. If x is an mkinfit object, and
+
The initial amount. If x is an mkinfit object, and ini is 'model', the fitted initial concentrations are used. Otherwise, ini must be numeric. If it has length one, it is used for the parent and initial values of metabolites are zero, otherwise, it must give values for @@ -89,7 +89,7 @@ all observed variables.
An object of class one_box, inheriting from ts.
An object of class one_box, inheriting from ts.
The object of type one_box to be plotted
The object of type one_box to be plotted
These objects are imported from other packages. Follow the links below to see their documentation.
@@ -66,7 +66,7 @@ below to see their documentation. diff --git a/docs/reference/reexports.md b/docs/reference/reexports.md new file mode 100644 index 0000000..a7a71c8 --- /dev/null +++ b/docs/reference/reexports.md @@ -0,0 +1,9 @@ +# Objects exported from other packages + +These objects are imported from other packages. Follow the links below +to see their documentation. + +- mkin: + + [`set_nd_nq()`](https://pkgdown.jrwb.de/mkin/reference/set_nd_nq.html), + [`set_nd_nq_focus()`](https://pkgdown.jrwb.de/mkin/reference/set_nd_nq.html) diff --git a/docs/reference/sawtooth-1.png b/docs/reference/sawtooth-1.png index 6cf67ed..b6fca96 100644 Binary files a/docs/reference/sawtooth-1.png and b/docs/reference/sawtooth-1.png differ diff --git a/docs/reference/sawtooth-2.png b/docs/reference/sawtooth-2.png index 3a4e7a2..d4e93f7 100644 Binary files a/docs/reference/sawtooth-2.png and b/docs/reference/sawtooth-2.png differ diff --git a/docs/reference/sawtooth-3.png b/docs/reference/sawtooth-3.png index 77e8eed..338feef 100644 Binary files a/docs/reference/sawtooth-3.png and b/docs/reference/sawtooth-3.png differ diff --git a/docs/reference/sawtooth.html b/docs/reference/sawtooth.html index 36fbb77..57467f0 100644 --- a/docs/reference/sawtooth.html +++ b/docs/reference/sawtooth.html @@ -9,7 +9,7 @@ n and i are disregarded."> pfm - 0.6.4 + 0.6.5A one_box object
A one_box object
An object of type one_box
An object of type one_box