blob: 0d5264a920c14d5eff232053e73abcc0b66c4a3d (
plain) (
blame)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
|
test_that("a pai object is correctly generated", {
skip_on_travis() # server certificate verification failed in curl_fetch_memory()
{glyphosate <- pai$new("glyphosate")} |>
expect_message("Querying BCPC for glyphosate") |>
expect_message("Querying PubChem for inchikey ") |>
expect_message("Get chemical information from RDKit using PubChem SMILES")
expect_equal(glyphosate$bcpc$cas, "1071-83-6")
expect_equal(glyphosate$bcpc$formula, "C3H8NO5P")
expect_equal(glyphosate$bcpc$iupac_name, "N-(phosphonomethyl)glycine")
expect_equal(names(glyphosate$identifier), "glyphosate")
ik = "XDDAORKBJWWYJS-UHFFFAOYSA-N"
expect_equal(glyphosate$inchikey, structure("XDDAORKBJWWYJS-UHFFFAOYSA-N", source = c("bcpc", "pubchem")))
expect_equal(round(glyphosate$mw, 2), structure(169.07, source = "pubchem"))
expect_equal(glyphosate$smiles[["PubChem"]], "C(C(=O)O)NCP(=O)(O)O")
})
|